Publications of Eduardo D. Sontag jointly with A. Raveh
Articles in journal or book chapters
  1. A. Raveh, M. Margaliot, E.D. Sontag, and T. Tuller. A model for competition for ribosomes in the cell. Proc. Royal Society Interface, 13:2015.1062, 2016. [PDF] Keyword(s): resource competition, ribosomes, entrainment, nonlinear systems, stability, contractions, contractive systems.
    We develop and analyze a general model for large-scale simultaneous mRNA translation and competition for ribosomes. Such models are especially important when dealing with highly expressed genes, as these consume more resources. For our model, we prove that the compound system always converges to a steady-state and that it always entrains or phase locks to periodically time-varying transition rates in any of the mRNA molecules. We use this model to explore the interactions between the various mRNA molecules and ribosomes at steady-state. We show that increasing the length of an mRNA molecule decreases the production rate of all the mRNAs. Increasing any of the codon translation rates in a specific mRNA molecule yields a local effect: an increase in the translation rate of this mRNA, and also a global effect: the translation rates in the other mRNA molecules all increase or all decrease. These results suggest that the effect of codon decoding rates of endogenous and heterologous mRNAs on protein production might be more complicated than previously thought.



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Last modified: Thu Nov 23 10:40:56 2017
Author: sontag.

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